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ASM343456v1

Organism name:
Lachnospiraceae bacterium AM25-11LB (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM25-11LB
BioSample:
SAMN09736298
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_003434565.1 (latest)
RefSeq assembly accession:
GCF_003434565.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QVGI01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1909381 [UID] 7205788 [GenBank] 7269298 [RefSeq]

See Genome Information for Lachnospiraceae bacterium AM25-11LB

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/16/2018 18:41:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,180
CDS (total)::3,126
Genes (coding)::2,940
CDS (coding)::2,940
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::186
Pseudo Genes (ambiguous residues)::6 of 186
Pseudo Genes (frameshifted)::57 of 186
Pseudo Genes (incomplete)::118 of 186
Pseudo Genes (internal stop)::27 of 186
Pseudo Genes (multiple problems)::22 of 186
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,124,743
Total ungapped length3,124,521
Gaps between scaffolds0
Number of scaffolds58
Scaffold N50162,029
Scaffold L507
Number of contigs79
Contig N50158,924
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)58

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,124,743583,124,521162,029210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lachnospiraceae bacterium AM25-11LBLachnospiraceae bacterium AM25-11LB

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002222595.2Blautia hanseniisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.6372.4073.79

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly