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ASM343460v1

  • Anomalous assembly.
Organism name:
Bacteroides sp. AM18-9 (CFB group bacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: AM18-9
BioSample:
SAMN09734877
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_003434605.1 (latest)
RefSeq assembly accession:
GCF_003434605.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTLG01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1909421 [UID] 7205868 [GenBank] 7268638 [RefSeq]

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/07/2018 20:14:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,906
CDS (total)::4,831
Genes (coding)::4,624
CDS (coding)::4,624
Genes (RNA)::75
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::69
ncRNAs::2
Pseudo Genes (total)::207
Pseudo Genes (ambiguous residues)::16 of 207
Pseudo Genes (frameshifted)::104 of 207
Pseudo Genes (incomplete)::91 of 207
Pseudo Genes (internal stop)::47 of 207
Pseudo Genes (multiple problems)::47 of 207
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,682,782
Total ungapped length5,680,167
Gaps between scaffolds0
Number of scaffolds109
Scaffold N50226,002
Scaffold L5010
Number of contigs198
Contig N50160,050
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)109

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,682,7821095,680,167226,002890

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides sp. AM18-9Bacteroides sp. AM18-9

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013009555.1Phocaeicola doreitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3180.9481.73

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna