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ASM343461v1

  • Anomalous assembly.
Organism name:
Bacteroides sp. AM23-18 (CFB group bacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: AM23-18
BioSample:
SAMN09736280
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_003434615.1 (latest)
RefSeq assembly accession:
GCF_003434615.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTLE01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1909411 [UID] 7205858 [GenBank] 7267698 [RefSeq]

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/07/2018 20:33:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,689
CDS (total)::4,614
Genes (coding)::4,448
CDS (coding)::4,448
Genes (RNA)::75
rRNAs::3, 1, 3 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::66
ncRNAs::2
Pseudo Genes (total)::166
Pseudo Genes (ambiguous residues)::4 of 166
Pseudo Genes (frameshifted)::80 of 166
Pseudo Genes (incomplete)::77 of 166
Pseudo Genes (internal stop)::42 of 166
Pseudo Genes (multiple problems)::34 of 166
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,540,748
Total ungapped length5,540,490
Gaps between scaffolds0
Number of scaffolds64
Scaffold N50207,825
Scaffold L507
Number of contigs81
Contig N50188,943
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)64

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,540,748645,540,490207,825170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides sp. AM23-18Bacteroides sp. AM23-18

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013009555.1Phocaeicola doreitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.2683.0081.75

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna