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ASM343462v1

Organism name:
Parabacteroides sp. AM17-47 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM17-47
BioSample:
SAMN09734852
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003434625.1 (latest)
RefSeq assembly accession:
GCF_003434625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTLI01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1909401 [UID] 7205848 [GenBank] 7656778 [RefSeq]

See Genome Information for Parabacteroides sp. AM17-47

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/07/2018 20:22:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,408
CDS (total)::4,336
Genes (coding)::4,193
CDS (coding)::4,193
Genes (RNA)::72
rRNAs::2, 1 (5S, 16S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1 (5S)
tRNAs::67
ncRNAs::2
Pseudo Genes (total)::143
Pseudo Genes (ambiguous residues)::4 of 143
Pseudo Genes (frameshifted)::71 of 143
Pseudo Genes (incomplete)::63 of 143
Pseudo Genes (internal stop)::31 of 143
Pseudo Genes (multiple problems)::21 of 143
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,151,325
Total ungapped length5,150,859
Gaps between scaffolds0
Number of scaffolds66
Scaffold N50179,864
Scaffold L5011
Number of contigs90
Contig N50132,992
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,151,325665,150,859179,864240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides sp. AM17-47Parabacteroides sp. AM17-47

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012845.1Parabacteroides distasonissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.5374.9780.26

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna