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ASM343475v1

  • Anomalous assembly.
Organism name:
Agathobaculum butyriciproducens (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: OF09-27
BioSample:
SAMN09736728
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003434755.1 (latest)
RefSeq assembly accession:
GCF_003434755.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QVFE01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1909491 [UID] 7206008 [GenBank] 7267838 [RefSeq]

See Genome Information for Agathobaculum butyriciproducens

There are 46 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/16/2018 18:36:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,390
CDS (total)::3,291
Genes (coding)::3,007
CDS (coding)::3,007
Genes (RNA)::99
rRNAs::6, 4, 3 (5S, 16S, 23S)
complete rRNAs::5, 1 (5S, 16S)
partial rRNAs::1, 3, 3 (5S, 16S, 23S)
tRNAs::82
ncRNAs::4
Pseudo Genes (total)::284
Pseudo Genes (ambiguous residues)::0 of 284
Pseudo Genes (frameshifted)::227 of 284
Pseudo Genes (incomplete)::59 of 284
Pseudo Genes (internal stop)::12 of 284
Pseudo Genes (multiple problems)::13 of 284
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,369,078
Total ungapped length3,369,078
Number of contigs97
Contig N5081,694
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)97

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,369,078973,369,07881,69400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Agathobaculum butyriciproducensAgathobaculum butyriciproducens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016586375.1Butyricicoccus faecihoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.3768.4876.23

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly