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ASM343504v1

Organism name:
Hungatella hathewayi (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF19-13AC
BioSample:
SAMN09734378
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003435045.1 (latest)
RefSeq assembly accession:
GCF_003435045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTJW01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1909531 [UID] 7206448 [GenBank] 7268018 [RefSeq]

See Genome Information for Hungatella hathewayi

There are 63 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/07/2018 17:22:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,744
CDS (total)::6,672
Genes (coding)::6,463
CDS (coding)::6,463
Genes (RNA)::72
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::64
ncRNAs::4
Pseudo Genes (total)::209
Pseudo Genes (ambiguous residues)::18 of 209
Pseudo Genes (frameshifted)::70 of 209
Pseudo Genes (incomplete)::129 of 209
Pseudo Genes (internal stop)::28 of 209
Pseudo Genes (multiple problems)::34 of 209
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,421,149
Total ungapped length7,420,111
Gaps between scaffolds0
Number of scaffolds85
Scaffold N50281,767
Scaffold L5010
Number of contigs133
Contig N50174,375
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)85

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,421,149857,420,111281,767480

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Hungatella hathewayiHungatella hathewayi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000160095.1Hungatella hathewayi DSM 13479suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014288005.1Hungatella hoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.9048.9554.81
Best-match type97.0470.9873.56

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%