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ASM343512v1

Organism name:
Clostridium sp. AM25-23AC (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM25-23AC
BioSample:
SAMN09736311
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003435125.1 (latest)
RefSeq assembly accession:
GCF_003435125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QWGI01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1909571 [UID] 7206838 [GenBank] 7269058 [RefSeq]

See Genome Information for Clostridium sp. AM25-23AC

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/28/2018 11:36:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,638
CDS (total)::3,578
Genes (coding)::3,414
CDS (coding)::3,414
Genes (RNA)::60
rRNAs::2, 1 (5S, 16S)
complete rRNAs::2 (5S)
partial rRNAs::1 (16S)
tRNAs::53
ncRNAs::4
Pseudo Genes (total)::164
Pseudo Genes (ambiguous residues)::8 of 164
Pseudo Genes (frameshifted)::47 of 164
Pseudo Genes (incomplete)::109 of 164
Pseudo Genes (internal stop)::25 of 164
Pseudo Genes (multiple problems)::23 of 164
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,757,782
Total ungapped length3,756,970
Gaps between scaffolds0
Number of scaffolds107
Scaffold N50116,920
Scaffold L5011
Number of contigs153
Contig N50106,356
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)107

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,757,7821073,756,970116,920460

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sp. AM25-23ACClostridium sp. AM25-23AC

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000153885.1Eubacterium ventriosumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.951.872.44

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena