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Source database (GenBank or RefSeq) File type

ASM343545v1

Organism name:

Clostridiaceae bacterium TF01-6 (firmicutes)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: TF01-6

BioSample:

SAMN09736867

BioProject:

PRJNA482748

Submitter:

BGI

Date:

2018/08/31

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

genus undefined

GenBank assembly accession:

GCA_003435455.1 (latest)

RefSeq assembly accession:

GCF_003435455.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

QWGM01

Assembly method:

SOAPdenovo v. 2

Expected final version:

yes

Genome coverage:

100x

Sequencing technology:

Illumina Hiseq

IDs: 1909731 [UID] 7207178 [GenBank] 7267818 [RefSeq]

See Genome Information for Clostridiaceae bacterium TF01-6

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003435455.1	=	GCF_003435455.1	ASM343545v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/28/2018 11:50:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,909
CDS (total)::3,845
Genes (coding)::3,674
CDS (coding)::3,674
Genes (RNA)::64
rRNAs::2, 1 (5S, 16S)
complete rRNAs::2, 1 (5S, 16S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::171
Pseudo Genes (ambiguous residues)::9 of 171
Pseudo Genes (frameshifted)::50 of 171
Pseudo Genes (incomplete)::106 of 171
Pseudo Genes (internal stop)::33 of 171
Pseudo Genes (multiple problems)::25 of 171
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,971,271
Total ungapped length	3,970,168
Gaps between scaffolds	0
Number of scaffolds	120
Scaffold N50	118,880
Scaffold L50	12
Number of contigs	159
Contig N50	104,112
Contig L50	12
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	120

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	95.85	2.79	3.92

Assembly

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ASM343545v1

See Genome Information for Clostridiaceae bacterium TF01-6

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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Average Nucleotide Identity (ANI) data

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