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Source database (GenBank or RefSeq) File type

ASM343563v1

Anomalous assembly.

Organism name:

Ruminococcus sp. AM16-34 (firmicutes)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: AM16-34

BioSample:

SAMN09734834

BioProject:

PRJNA482748

Submitter:

BGI

Date:

2018/08/31

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_003435635.1 (latest)

RefSeq assembly accession:

GCF_003435635.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

QTUR01

Assembly method:

SOAPdenovo v. 2

Expected final version:

yes

Genome coverage:

100x

Sequencing technology:

Illumina Hiseq

IDs: 1909821 [UID] 7207368 [GenBank] 7267918 [RefSeq]

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003435635.1	=	GCF_003435635.1	ASM343563v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/09/2018 10:54:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,833
CDS (total)::2,770
Genes (coding)::2,660
CDS (coding)::2,660
Genes (RNA)::63
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::110
Pseudo Genes (ambiguous residues)::3 of 110
Pseudo Genes (frameshifted)::29 of 110
Pseudo Genes (incomplete)::75 of 110
Pseudo Genes (internal stop)::22 of 110
Pseudo Genes (multiple problems)::17 of 110
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,017,343
Total ungapped length	3,017,253
Gaps between scaffolds	0
Number of scaffolds	40
Scaffold N50	156,936
Scaffold L50	6
Number of contigs	49
Contig N50	134,088
Contig L50	7
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	40

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	97.44	82.78	76.63

Assembly

Genome Assembly

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ASM343563v1

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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Taxonomy Check Data

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result