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ASM343603v1

Organism name:
Agathobacter rectalis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TM10-3
BioSample:
SAMN09737029
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003436035.1 (latest)
RefSeq assembly accession:
GCF_003436035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSOB01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1910041 [UID] 7207968 [GenBank] 7267798 [RefSeq]

See Genome Information for Agathobacter rectalis

There are 428 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 09:50:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,825
CDS (total)::2,771
Genes (coding)::2,646
CDS (coding)::2,646
Genes (RNA)::54
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::125
Pseudo Genes (ambiguous residues)::2 of 125
Pseudo Genes (frameshifted)::35 of 125
Pseudo Genes (incomplete)::85 of 125
Pseudo Genes (internal stop)::27 of 125
Pseudo Genes (multiple problems)::21 of 125
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,945,641
Total ungapped length2,945,372
Gaps between scaffolds0
Number of scaffolds54
Scaffold N50143,037
Scaffold L508
Number of contigs67
Contig N50131,615
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,945,641542,945,372143,037130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Agathobacter rectalisAgathobacter rectalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000020605.1Agathobacter rectalis ATCC 33656suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000020605.1Agathobacter rectalissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.6474.2063.36
Best-match type97.6474.2063.36

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna