U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM343613v1

Organism name:
Bifidobacterium bifidum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TM07-4AC
BioSample:
SAMN09737006
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003436135.1 (latest)
RefSeq assembly accession:
GCF_003436135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSOS01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1910091 [UID] 7208068 [GenBank] 7285818 [RefSeq]

See Genome Information for Bifidobacterium bifidum

There are 320 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 09:57:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,854
CDS (total)::1,795
Genes (coding)::1,693
CDS (coding)::1,693
Genes (RNA)::59
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::102
Pseudo Genes (ambiguous residues)::0 of 102
Pseudo Genes (frameshifted)::58 of 102
Pseudo Genes (incomplete)::45 of 102
Pseudo Genes (internal stop)::11 of 102
Pseudo Genes (multiple problems)::12 of 102
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,181,809
Total ungapped length2,181,779
Gaps between scaffolds0
Number of scaffolds12
Scaffold N501,281,098
Scaffold L501
Number of contigs15
Contig N501,217,830
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,181,809122,181,7791,281,09830

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium bifidumBifidobacterium bifidum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637095.1Bifidobacterium bifidumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637095.1Bifidobacterium bifidumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1193.9092.66
Best-match type99.1193.9092.66

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna