U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM343621v1

  • Anomalous assembly.
Organism name:
Ruminococcus sp. TM10-9AT (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: TM10-9AT
BioSample:
SAMN09737031
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003436215.1 (latest)
RefSeq assembly accession:
GCF_003436215.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSNZ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1910131 [UID] 7208158 [GenBank] 7285118 [RefSeq]

See Genome Information for Ruminococcus sp. TM10-9AT

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 09:49:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,622
CDS (total)::3,566
Genes (coding)::3,350
CDS (coding)::3,350
Genes (RNA)::56
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::1 (16S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::216
Pseudo Genes (ambiguous residues)::7 of 216
Pseudo Genes (frameshifted)::65 of 216
Pseudo Genes (incomplete)::151 of 216
Pseudo Genes (internal stop)::27 of 216
Pseudo Genes (multiple problems)::32 of 216
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,930,959
Total ungapped length3,930,259
Gaps between scaffolds0
Number of scaffolds75
Scaffold N50111,393
Scaffold L5011
Number of contigs101
Contig N50110,964
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)75

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,930,959753,930,259111,393260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus sp. TM10-9ATRuminococcus sp. TM10-9AT

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025148125.1Blautia wexleraesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.1650.0742.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna