U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM343641v1

Organism name:
Bacteroides stercoris (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TM06-26
BioSample:
SAMN09736989
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_003436415.1 (latest)
RefSeq assembly accession:
GCF_003436415.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSPH01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1910231 [UID] 7208348 [GenBank] 7285038 [RefSeq]

See Genome Information for Bacteroides stercoris

There are 204 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 10:43:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,142
CDS (total)::3,084
Genes (coding)::2,646
CDS (coding)::2,646
Genes (RNA)::58
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::51
ncRNAs::2
Pseudo Genes (total)::438
Pseudo Genes (ambiguous residues)::0 of 438
Pseudo Genes (frameshifted)::363 of 438
Pseudo Genes (incomplete)::76 of 438
Pseudo Genes (internal stop)::25 of 438
Pseudo Genes (multiple problems)::24 of 438
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,672,134
Total ungapped length3,672,134
Number of contigs132
Contig N5054,147
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)132

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,672,1341323,672,13454,14700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides stercorisBacteroides stercoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154525.1Bacteroides stercoris ATCC 43183suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154525.1Bacteroides stercorissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7582.4475.51
Best-match type98.7582.4475.51

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna