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ASM343665v1

Organism name:
Bifidobacterium bifidum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TM02-15
BioSample:
SAMN09736964
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003436655.1 (latest)
RefSeq assembly accession:
GCF_003436655.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSQF01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1910351 [UID] 7208588 [GenBank] 7287308 [RefSeq]

See Genome Information for Bifidobacterium bifidum

There are 320 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 11:45:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,865
CDS (total)::1,803
Genes (coding)::1,693
CDS (coding)::1,693
Genes (RNA)::62
rRNAs::2, 1, 3 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::110
Pseudo Genes (ambiguous residues)::2 of 110
Pseudo Genes (frameshifted)::66 of 110
Pseudo Genes (incomplete)::49 of 110
Pseudo Genes (internal stop)::11 of 110
Pseudo Genes (multiple problems)::18 of 110
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,200,316
Total ungapped length2,200,236
Gaps between scaffolds0
Number of scaffolds22
Scaffold N50207,318
Scaffold L505
Number of contigs30
Contig N50143,838
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,200,316222,200,236207,31880

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium bifidumBifidobacterium bifidum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000741085.1Bifidobacterium bifidumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000741085.1Bifidobacterium bifidumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1794.5994.24
Best-match type99.1794.5994.24

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna