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ASM343672v1

Organism name:
[Ruminococcus] lactaris (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TF11-7
BioSample:
SAMN09736951
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003436725.1 (latest)
RefSeq assembly accession:
GCF_003436725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSQN01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1910401 [UID] 7208688 [GenBank] 7285318 [RefSeq]

See Genome Information for [Ruminococcus] lactaris

There are 76 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 11:44:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,940
CDS (total)::2,881
Genes (coding)::2,735
CDS (coding)::2,735
Genes (RNA)::59
rRNAs::1, 2, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::2, 1 (16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::146
Pseudo Genes (ambiguous residues)::7 of 146
Pseudo Genes (frameshifted)::43 of 146
Pseudo Genes (incomplete)::102 of 146
Pseudo Genes (internal stop)::18 of 146
Pseudo Genes (multiple problems)::23 of 146
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,984,319
Total ungapped length2,983,798
Gaps between scaffolds0
Number of scaffolds86
Scaffold N5066,868
Scaffold L5016
Number of contigs118
Contig N5056,650
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)86

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,984,319862,983,79866,868320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
[Ruminococcus] lactaris[Ruminococcus] lactaris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025152405.1[Ruminococcus] lactaris ATCC 29176type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025152405.1[Ruminococcus] lactaristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7876.6883.70
Best-match type98.7876.6883.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna