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ASM343694v1

Organism name:
Dorea formicigenerans (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TF09-3
BioSample:
SAMN09736927
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003436945.1 (latest)
RefSeq assembly accession:
GCF_003436945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSRA01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1910511 [UID] 7208908 [GenBank] 7284908 [RefSeq]

See Genome Information for Dorea formicigenerans

There are 91 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 12:14:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,445
CDS (total)::3,386
Genes (coding)::3,154
CDS (coding)::3,154
Genes (RNA)::59
rRNAs::3, 1, 2 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::232
Pseudo Genes (ambiguous residues)::7 of 232
Pseudo Genes (frameshifted)::67 of 232
Pseudo Genes (incomplete)::158 of 232
Pseudo Genes (internal stop)::43 of 232
Pseudo Genes (multiple problems)::40 of 232
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,420,271
Total ungapped length3,420,011
Gaps between scaffolds0
Number of scaffolds74
Scaffold N50119,698
Scaffold L509
Number of contigs100
Contig N50106,089
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)74

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,420,271743,420,011119,698260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dorea formicigeneransDorea formicigenerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025150245.1Dorea formicigeneranssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025150245.1Dorea formicigeneranssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9167.5572.47
Best-match type97.9167.5572.47

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna