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ASM343719v1

Organism name:
Paenibacillus polymyxa (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TF07-21-d
BioSample:
SAMN09736903
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_003437195.1 (latest)
RefSeq assembly accession:
GCF_003437195.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSRT01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1910621 [UID] 7209138 [GenBank] 14338838 [RefSeq]

See Genome Information for Paenibacillus polymyxa

There are 127 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 13:23:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,113
CDS (total)::4,970
Genes (coding)::3,989
CDS (coding)::3,989
Genes (RNA)::143
rRNAs::12, 17, 18 (5S, 16S, 23S)
complete rRNAs::12 (5S)
partial rRNAs::17, 18 (16S, 23S)
tRNAs::92
ncRNAs::4
Pseudo Genes (total)::981
Pseudo Genes (ambiguous residues)::0 of 981
Pseudo Genes (frameshifted)::924 of 981
Pseudo Genes (incomplete)::65 of 981
Pseudo Genes (internal stop)::29 of 981
Pseudo Genes (multiple problems)::33 of 981
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,657,158
Total ungapped length5,656,032
Gaps between scaffolds0
Number of scaffolds99
Scaffold N50165,429
Scaffold L5011
Number of contigs101
Contig N50165,429
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)99

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,657,158995,656,032165,42920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paenibacillus polymyxaPaenibacillus polymyxa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000217775.1Paenibacillus polymyxa ATCC 842type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000217775.1Paenibacillus polymyxatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5592.7688.95
Best-match type98.5592.7688.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna