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ASM343732v1

Organism name:
Bifidobacterium bifidum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TF06-14AC
BioSample:
SAMN09736890
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003437325.1 (latest)
RefSeq assembly accession:
GCF_003437325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSSD01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1910681 [UID] 7209248 [GenBank] 7284108 [RefSeq]

See Genome Information for Bifidobacterium bifidum

There are 320 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 12:51:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,845
CDS (total)::1,787
Genes (coding)::1,671
CDS (coding)::1,671
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::116
Pseudo Genes (ambiguous residues)::1 of 116
Pseudo Genes (frameshifted)::69 of 116
Pseudo Genes (incomplete)::48 of 116
Pseudo Genes (internal stop)::15 of 116
Pseudo Genes (multiple problems)::17 of 116
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,166,065
Total ungapped length2,166,015
Gaps between scaffolds0
Number of scaffolds18
Scaffold N50278,746
Scaffold L503
Number of contigs23
Contig N50253,412
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,166,065182,166,015278,74650

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium bifidumBifidobacterium bifidum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000741085.1Bifidobacterium bifidumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000741085.1Bifidobacterium bifidumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0493.4491.65
Best-match type99.0493.4491.65

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna