U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM343759v1

Organism name:
Enterocloster bolteae (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TF09-4AC
BioSample:
SAMN09736930
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003437595.1 (latest)
RefSeq assembly accession:
GCF_003437595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSQX01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1910821 [UID] 7209528 [GenBank] 7283968 [RefSeq]

See Genome Information for Enterocloster bolteae

There are 119 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 13:12:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,781
CDS (total)::5,707
Genes (coding)::5,566
CDS (coding)::5,566
Genes (RNA)::74
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::141
Pseudo Genes (ambiguous residues)::4 of 141
Pseudo Genes (frameshifted)::62 of 141
Pseudo Genes (incomplete)::83 of 141
Pseudo Genes (internal stop)::30 of 141
Pseudo Genes (multiple problems)::32 of 141
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,232,356
Total ungapped length6,232,117
Gaps between scaffolds0
Number of scaffolds46
Scaffold N50301,870
Scaffold L508
Number of contigs62
Contig N50251,681
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)46

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,232,356466,232,117301,870160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterocloster bolteaeEnterocloster bolteae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002234575.2Enterocloster bolteaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002234575.2Enterocloster bolteaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2384.4679.59
Best-match type99.2384.4679.59

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna