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ASM343824v1

Organism name:
Streptococcus ilei (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: OM06-9
BioSample:
SAMN09736829
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003438245.1 (latest)
RefSeq assembly accession:
GCF_003438245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSTR01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1911141 [UID] 7210168 [GenBank] 7287678 [RefSeq]

See Genome Information for Streptococcus ilei

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 14:07:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,961
CDS (total)::1,907
Genes (coding)::1,793
CDS (coding)::1,793
Genes (RNA)::54
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::114
Pseudo Genes (ambiguous residues)::0 of 114
Pseudo Genes (frameshifted)::10 of 114
Pseudo Genes (incomplete)::100 of 114
Pseudo Genes (internal stop)::17 of 114
Pseudo Genes (multiple problems)::11 of 114
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,965,871
Total ungapped length1,965,791
Gaps between scaffolds0
Number of scaffolds8
Scaffold N501,407,039
Scaffold L501
Number of contigs16
Contig N50608,790
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)8

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,965,87181,965,7911,407,03980

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus ileiStreptococcus ilei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000479335.1Streptococcus ileitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000479335.1Streptococcus ileitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.1189.4088.21
Best-match type96.1189.4088.21

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna