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ASM343882v1

Organism name:
Parabacteroides merdae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OM06-16AC
BioSample:
SAMN09736819
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003438825.1 (latest)
RefSeq assembly accession:
GCF_003438825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSTY01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1911441 [UID] 7210768 [GenBank] 7664788 [RefSeq]

See Genome Information for Parabacteroides merdae

There are 268 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 14:50:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,014
CDS (total)::3,938
Genes (coding)::3,742
CDS (coding)::3,742
Genes (RNA)::76
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::71
ncRNAs::2
Pseudo Genes (total)::196
Pseudo Genes (ambiguous residues)::7 of 196
Pseudo Genes (frameshifted)::96 of 196
Pseudo Genes (incomplete)::103 of 196
Pseudo Genes (internal stop)::39 of 196
Pseudo Genes (multiple problems)::44 of 196
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,625,443
Total ungapped length4,625,210
Gaps between scaffolds0
Number of scaffolds67
Scaffold N50168,840
Scaffold L5011
Number of contigs86
Contig N50158,100
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)67

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,625,443674,625,210168,840190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides merdaeParabacteroides merdae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154105.1Parabacteroides merdae ATCC 43184type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154105.1Parabacteroides merdaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7882.6986.30
Best-match type98.7882.6986.30

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna