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ASM343900v1

Organism name:
Parabacteroides merdae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OM05-11AA
BioSample:
SAMN09736795
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003439005.1 (latest)
RefSeq assembly accession:
GCF_003439005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSUP01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1911531 [UID] 7210968 [GenBank] 7665068 [RefSeq]

See Genome Information for Parabacteroides merdae

There are 268 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 15:57:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,710
CDS (total)::3,638
Genes (coding)::3,500
CDS (coding)::3,500
Genes (RNA)::72
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1 (16S)
partial rRNAs::1 (23S)
tRNAs::68
ncRNAs::2
Pseudo Genes (total)::138
Pseudo Genes (ambiguous residues)::4 of 138
Pseudo Genes (frameshifted)::60 of 138
Pseudo Genes (incomplete)::76 of 138
Pseudo Genes (internal stop)::31 of 138
Pseudo Genes (multiple problems)::26 of 138
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,475,130
Total ungapped length4,474,970
Gaps between scaffolds0
Number of scaffolds61
Scaffold N50172,069
Scaffold L508
Number of contigs77
Contig N50140,227
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,475,130614,474,970172,069160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides merdaeParabacteroides merdae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154105.1Parabacteroides merdae ATCC 43184type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154105.1Parabacteroides merdaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9580.8081.59
Best-match type97.9580.8081.59

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna