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Source database (GenBank or RefSeq) File type

ASM343904v1

Organism name:

Bacteroides fragilis (CFB group bacteria)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: OM05-11

BioSample:

SAMN09736794

BioProject:

PRJNA482748

Submitter:

BGI

Date:

2018/08/31

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

annotation fails completeness check
many frameshifted proteins

GenBank assembly accession:

GCA_003439045.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

QSUQ01

Assembly method:

SPAdes v. 3.1.0

Expected final version:

yes

Genome coverage:

100x

Sequencing technology:

IonProton

IDs: 1911561 [UID] 7211028 [GenBank]

See Genome Information for Bacteroides fragilis

Pathogen Detection Resources

There are 1152 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003439045.1	n/a	n/a	ASM343904v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/06/2018 16:03:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,625
CDS (total)::4,556
Genes (coding)::3,471
CDS (coding)::3,471
Genes (RNA)::69
rRNAs::6, 4, 1 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 3 (5S, 16S)
tRNAs::56
ncRNAs::2
Pseudo Genes (total)::1,085
Pseudo Genes (ambiguous residues)::0 of 1,085
Pseudo Genes (frameshifted)::984 of 1,085
Pseudo Genes (incomplete)::103 of 1,085
Pseudo Genes (internal stop)::77 of 1,085
Pseudo Genes (multiple problems)::73 of 1,085
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,145,408
Total ungapped length	5,145,097
Gaps between scaffolds	0
Number of scaffolds	184
Scaffold N50	66,435
Scaffold L50	24
Number of contigs	185
Contig N50	66,435
Contig L50	24
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	184

	ANI	Query coverage	Subject coverage
Declared type	87.54	70.34	69.45
Best-match type	99.00	85.27	86.03

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ASM343904v1

See Genome Information for Bacteroides fragilis

Pathogen Detection Resources

There are 1152 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

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