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ASM343913v1

  • Anomalous assembly.
Organism name:
Bacillus cereus (firmicutes)
Taxonomy check:
Failed
Infraspecific name:
Strain: OM04-20
BioSample:
SAMN09736785
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
  • many frameshifted proteins
GenBank assembly accession:
GCA_003439135.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QSUV01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1911591 [UID] 7211098 [GenBank]

See Genome Information for Bacillus cereus

There are 2513 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 16:53:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,807
CDS (total)::5,707
Genes (coding)::5,044
CDS (coding)::5,044
Genes (RNA)::100
rRNAs::10, 3, 12 (5S, 16S, 23S)
complete rRNAs::10, 1 (5S, 23S)
partial rRNAs::3, 11 (16S, 23S)
tRNAs::70
ncRNAs::5
Pseudo Genes (total)::663
Pseudo Genes (ambiguous residues)::0 of 663
Pseudo Genes (frameshifted)::538 of 663
Pseudo Genes (incomplete)::127 of 663
Pseudo Genes (internal stop)::72 of 663
Pseudo Genes (multiple problems)::65 of 663
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,512,240
Total ungapped length5,512,240
Number of contigs169
Contig N50133,079
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)169

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,512,2401695,512,240133,07900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus cereusBacillus cereus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000007825.1Bacillus cereus ATCC 14579type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001884105.1Bacillus lutitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.3675.7876.97
Best-match type98.6584.6791.62

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna