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ASM343927v1

Organism name:
Phocaeicola vulgatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OM03-13AC
BioSample:
SAMN09736768
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003439275.1 (latest)
RefSeq assembly accession:
GCF_003439275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSVC01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1911661 [UID] 7211268 [GenBank] 7278188 [RefSeq]

See Genome Information for Phocaeicola vulgatus

There are 1480 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 16:47:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,366
CDS (total)::4,294
Genes (coding)::4,112
CDS (coding)::4,112
Genes (RNA)::72
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::66
ncRNAs::2
Pseudo Genes (total)::182
Pseudo Genes (ambiguous residues)::4 of 182
Pseudo Genes (frameshifted)::94 of 182
Pseudo Genes (incomplete)::86 of 182
Pseudo Genes (internal stop)::47 of 182
Pseudo Genes (multiple problems)::41 of 182
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,009,031
Total ungapped length5,008,477
Gaps between scaffolds0
Number of scaffolds141
Scaffold N5083,429
Scaffold L5018
Number of contigs166
Contig N5078,585
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)141

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,009,0311415,008,47783,429250

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola vulgatusPhocaeicola vulgatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_028538915.1Phocaeicola vulgatus ATCC 8482suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028538915.1Phocaeicola vulgatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3482.2682.32
Best-match type99.3482.2682.32

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna