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ASM343940v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: OM02-12AC
BioSample:
SAMN09736747
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003439405.1 (latest)
RefSeq assembly accession:
GCF_003439405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSVP01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1911721 [UID] 7211388 [GenBank] 7278068 [RefSeq]

See Genome Information for Escherichia coli

There are 265830 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 16:50:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,310
CDS (total)::5,238
Genes (coding)::4,904
CDS (coding)::4,904
Genes (RNA)::72
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::62
ncRNAs::6
Pseudo Genes (total)::334
Pseudo Genes (ambiguous residues)::12 of 334
Pseudo Genes (frameshifted)::131 of 334
Pseudo Genes (incomplete)::146 of 334
Pseudo Genes (internal stop)::81 of 334
Pseudo Genes (multiple problems)::31 of 334
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,964,911
Total ungapped length4,964,373
Gaps between scaffolds0
Number of scaffolds154
Scaffold N5095,624
Scaffold L5015
Number of contigs186
Contig N5095,624
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)154

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,964,9111544,964,37395,624320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000013265.1Escherichia coli UTI89claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000013265.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9685.9082.33
Best-match type98.9685.9082.33

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna