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OM02-37

Organism name:
Parabacteroides gordonii (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OM02-37
BioSample:
SAMN09736761
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003439895.1 (latest)
RefSeq assembly accession:
GCF_003439895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QSWF01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1911941 [UID] 7211848 [GenBank] 7665968 [RefSeq]

See Genome Information for Parabacteroides gordonii

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/06/2018 19:30:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,959
CDS (total)::4,888
Genes (coding)::4,797
CDS (coding)::4,797
Genes (RNA)::71
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 2 (16S, 23S)
tRNAs::65
ncRNAs::2
Pseudo Genes (total)::91
Pseudo Genes (ambiguous residues)::1 of 91
Pseudo Genes (frameshifted)::38 of 91
Pseudo Genes (incomplete)::52 of 91
Pseudo Genes (internal stop)::16 of 91
Pseudo Genes (multiple problems)::15 of 91
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,348,904
Total ungapped length6,348,794
Gaps between scaffolds0
Number of scaffolds38
Scaffold N50347,093
Scaffold L506
Number of contigs49
Contig N50321,978
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)38

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,348,904386,348,794347,093110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides gordoniiParabacteroides gordonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000969825.1Parabacteroides gordonii MS-1 = DSM 23371suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000969825.1Parabacteroides gordoniisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4296.0590.27
Best-match type99.4296.0590.27

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna