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ASM344416v1

Organism name:
Thermodesulfobacterium commune (bacteria)
Taxonomy check:
OK
Isolate:
UBA12529
BioSample:
SAMN08017432
BioProject:
PRJNA417962
Submitter:
University of Queensland
Date:
2018/09/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_003444165.1 (latest)
RefSeq assembly accession:
GCF_003444165.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
DLVE01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
15.10x
Sequencing technology:
Illumina HiSeq 2500

IDs: 1912491 [UID] 7270128 [GenBank] 40759978 [RefSeq]

See Genome Information for Thermodesulfobacterium commune

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/16/2018 10:15:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,622
CDS (total)::1,575
Genes (coding)::1,558
CDS (coding)::1,558
Genes (RNA)::47
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::41
ncRNAs::3
Pseudo Genes (total)::17
Pseudo Genes (ambiguous residues)::0 of 17
Pseudo Genes (frameshifted)::9 of 17
Pseudo Genes (incomplete)::8 of 17
Pseudo Genes (internal stop)::2 of 17
Pseudo Genes (multiple problems)::2 of 17
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,551,769
Total ungapped length1,544,514
Gaps between scaffolds0
Number of scaffolds101
Scaffold N5025,648
Scaffold L5021
Number of contigs125
Contig N5023,691
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)101

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,551,7691011,544,51425,648240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermodesulfobacterium communeThermodesulfobacterium commune

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000734015.1Thermodesulfobacterium commune DSM 2178type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000734015.1Thermodesulfobacterium communetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6796.9384.87
Best-match type98.6796.9384.87

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna