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ASM345791v1

Organism name:
[Clostridium] leptum (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF28-26
BioSample:
SAMN09734546
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_003457915.1 (latest)
RefSeq assembly accession:
GCF_003457915.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRTC01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1919331 [UID] 7287118 [GenBank] 7346738 [RefSeq]

See Genome Information for [Clostridium] leptum

There are 41 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 21:37:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,863
CDS (total)::2,807
Genes (coding)::2,357
CDS (coding)::2,357
Genes (RNA)::56
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::450
Pseudo Genes (ambiguous residues)::0 of 450
Pseudo Genes (frameshifted)::383 of 450
Pseudo Genes (incomplete)::67 of 450
Pseudo Genes (internal stop)::22 of 450
Pseudo Genes (multiple problems)::22 of 450
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,730,117
Total ungapped length2,730,117
Number of contigs136
Contig N5037,420
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)136

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,730,1171362,730,11737,42000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
[Clostridium] leptum[Clostridium] leptum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014287635.1Roseburia zhaniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.912.932.27

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena