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Source database (GenBank or RefSeq) File type

ASM345792v1

Organism name:: Bacteroides uniformis (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: AF28-11
BioSample:: SAMN09734539
BioProject:: PRJNA482748
Submitter:: BGI
Date:: 2018/09/05
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003457925.1 (latest)
RefSeq assembly accession:: GCF_003457925.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QRTH01
Assembly method:: SOAPdenovo v. 2
Expected final version:: yes
Genome coverage:: 100x
Sequencing technology:: Illumina Hiseq

IDs: 1919321 [UID] 7287108 [GenBank] 7349878 [RefSeq]

See Genome Information for Bacteroides uniformis

Pathogen Detection Resources

There are 765 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003457925.1	=	GCF_003457925.1	ASM345792v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/03/2018 22:14:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,112
CDS (total)::4,046
Genes (coding)::3,824
CDS (coding)::3,824
Genes (RNA)::66
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::60
ncRNAs::3
Pseudo Genes (total)::222
Pseudo Genes (ambiguous residues)::7 of 222
Pseudo Genes (frameshifted)::108 of 222
Pseudo Genes (incomplete)::113 of 222
Pseudo Genes (internal stop)::62 of 222
Pseudo Genes (multiple problems)::59 of 222
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,602,560
Total ungapped length	4,602,267
Gaps between scaffolds	0
Number of scaffolds	46
Scaffold N50	407,839
Scaffold L50	4
Number of contigs	68
Contig N50	319,362
Contig L50	6
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	46

	ANI	Query coverage	Subject coverage
Declared type	96.50	72.83	72.31
Best-match type	96.50	72.83	72.31

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ASM345792v1

See Genome Information for Bacteroides uniformis

Pathogen Detection Resources

There are 765 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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