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ASM345794v1

Organism name:
Thomasclavelia ramosa (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF28-13
BioSample:
SAMN09734541
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003457945.1 (latest)
RefSeq assembly accession:
GCF_003457945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRTG01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1919341 [UID] 7287128 [GenBank] 7355598 [RefSeq]

See Genome Information for Thomasclavelia ramosa

There are 138 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 21:37:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,780
CDS (total)::3,727
Genes (coding)::3,621
CDS (coding)::3,621
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::106
Pseudo Genes (ambiguous residues)::2 of 106
Pseudo Genes (frameshifted)::54 of 106
Pseudo Genes (incomplete)::40 of 106
Pseudo Genes (internal stop)::38 of 106
Pseudo Genes (multiple problems)::25 of 106
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,799,075
Total ungapped length3,798,795
Gaps between scaffolds0
Number of scaffolds58
Scaffold N50108,782
Scaffold L5010
Number of contigs77
Contig N5094,298
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)58

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,799,075583,798,795108,782190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thomasclavelia ramosaThomasclavelia ramosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154485.1Thomasclavelia ramosa DSM 1402type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154485.1Thomasclavelia ramosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.7281.3195.50
Best-match type99.7281.3195.50

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna