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ASM345820v1

Organism name:
Megamonas rupellensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF27-12
BioSample:
SAMN09734524
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003458205.1 (latest)
RefSeq assembly accession:
GCF_003458205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRTP01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1919471 [UID] 7287828 [GenBank] 7351278 [RefSeq]

See Genome Information for Megamonas rupellensis

There are 6 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 21:37:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,388
CDS (total)::2,341
Genes (coding)::2,303
CDS (coding)::2,303
Genes (RNA)::47
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::40
ncRNAs::4
Pseudo Genes (total)::38
Pseudo Genes (ambiguous residues)::9 of 38
Pseudo Genes (frameshifted)::16 of 38
Pseudo Genes (incomplete)::10 of 38
Pseudo Genes (internal stop)::8 of 38
Pseudo Genes (multiple problems)::5 of 38
CRISPR Arrays::7
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,451,587
Total ungapped length2,450,862
Gaps between scaffolds0
Number of scaffolds67
Scaffold N5063,124
Scaffold L5011
Number of contigs100
Contig N5053,229
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)67

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,451,587672,450,86263,124330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Megamonas rupellensisMegamonas rupellensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000378365.1Megamonas rupellensis DSM 19944type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000378365.1Megamonas rupellensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5784.7989.20
Best-match type98.5784.7989.20

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna