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ASM345844v1

Organism name:
Phocaeicola plebeius (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF25-1LB
BioSample:
SAMN09734492
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • many frameshifted proteins
GenBank assembly accession:
GCA_003458445.1 (latest)
RefSeq assembly accession:
GCF_003458445.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRUI01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1919601 [UID] 7288138 [GenBank] 7464458 [RefSeq]

See Genome Information for Phocaeicola plebeius

There are 112 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 22:32:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,792
CDS (total)::3,711
Genes (coding)::3,286
CDS (coding)::3,286
Genes (RNA)::81
rRNAs::3, 3, 1 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 23S)
partial rRNAs::1, 3 (5S, 16S)
tRNAs::72
ncRNAs::2
Pseudo Genes (total)::425
Pseudo Genes (ambiguous residues)::0 of 425
Pseudo Genes (frameshifted)::363 of 425
Pseudo Genes (incomplete)::61 of 425
Pseudo Genes (internal stop)::24 of 425
Pseudo Genes (multiple problems)::22 of 425
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,272,699
Total ungapped length4,272,446
Gaps between scaffolds0
Number of scaffolds178
Scaffold N5046,020
Scaffold L5029
Number of contigs180
Contig N5046,020
Contig L5029
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)178

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,272,6991784,272,44646,02020

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola plebeiusPhocaeicola plebeius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000187895.1Phocaeicola plebeius DSM 17135suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000187895.1Phocaeicola plebeiussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.6166.2864.04
Best-match type94.6166.2864.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna