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ASM345856v1

Organism name:
Phocaeicola coprocola (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF24-2
BioSample:
SAMN09734467
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003458565.1 (latest)
RefSeq assembly accession:
GCF_003458565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRUU01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1919651 [UID] 7288278 [GenBank] 7360818 [RefSeq]

See Genome Information for Phocaeicola coprocola

There are 53 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 22:55:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,956
CDS (total)::2,865
Genes (coding)::2,766
CDS (coding)::2,766
Genes (RNA)::91
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::86
ncRNAs::2
Pseudo Genes (total)::99
Pseudo Genes (ambiguous residues)::2 of 99
Pseudo Genes (frameshifted)::50 of 99
Pseudo Genes (incomplete)::48 of 99
Pseudo Genes (internal stop)::28 of 99
Pseudo Genes (multiple problems)::24 of 99
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,553,784
Total ungapped length3,553,544
Gaps between scaffolds0
Number of scaffolds166
Scaffold N5044,590
Scaffold L5025
Number of contigs186
Contig N5044,242
Contig L5026
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)166

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,553,7841663,553,54444,590200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola coprocolaPhocaeicola coprocola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154845.1Phocaeicola coprocola DSM 17136suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154845.1Phocaeicola coprocolasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7483.1168.75
Best-match type98.7483.1168.75

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna