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ASM345859v1

Organism name:
Phocaeicola plebeius (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF24-16AC
BioSample:
SAMN09734461
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003458595.1 (latest)
RefSeq assembly accession:
GCF_003458595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRUY01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1919671 [UID] 7288318 [GenBank] 7359878 [RefSeq]

See Genome Information for Phocaeicola plebeius

There are 112 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 23:03:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,469
CDS (total)::3,393
Genes (coding)::3,278
CDS (coding)::3,278
Genes (RNA)::76
rRNAs::2, 1 (5S, 16S)
complete rRNAs::2, 1 (5S, 16S)
tRNAs::71
ncRNAs::2
Pseudo Genes (total)::115
Pseudo Genes (ambiguous residues)::8 of 115
Pseudo Genes (frameshifted)::47 of 115
Pseudo Genes (incomplete)::52 of 115
Pseudo Genes (internal stop)::26 of 115
Pseudo Genes (multiple problems)::17 of 115
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,095,120
Total ungapped length4,094,220
Gaps between scaffolds0
Number of scaffolds96
Scaffold N5081,447
Scaffold L5016
Number of contigs136
Contig N5078,426
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)96

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,095,120964,094,22081,447400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola plebeiusPhocaeicola plebeius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000187895.1Phocaeicola plebeius DSM 17135suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000187895.1Phocaeicola plebeiussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.4767.8662.84
Best-match type94.4767.8662.84

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna