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ASM345864v1

Organism name:
Streptococcus salivarius (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF23-9AC
BioSample:
SAMN09734456
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003458645.1 (latest)
RefSeq assembly accession:
GCF_003458645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRVC01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1919701 [UID] 7288398 [GenBank] 7354138 [RefSeq]

See Genome Information for Streptococcus salivarius

There are 359 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 22:37:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,073
CDS (total)::2,030
Genes (coding)::1,960
CDS (coding)::1,960
Genes (RNA)::43
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::36
ncRNAs::4
Pseudo Genes (total)::70
Pseudo Genes (ambiguous residues)::2 of 70
Pseudo Genes (frameshifted)::35 of 70
Pseudo Genes (incomplete)::32 of 70
Pseudo Genes (internal stop)::17 of 70
Pseudo Genes (multiple problems)::14 of 70
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,128,339
Total ungapped length2,128,219
Gaps between scaffolds0
Number of scaffolds51
Scaffold N50141,956
Scaffold L505
Number of contigs63
Contig N50114,519
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)51

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,128,339512,128,219141,956120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus salivariusStreptococcus salivarius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000785515.1Streptococcus salivariustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000785515.1Streptococcus salivariustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.5883.3581.05
Best-match type95.5883.3581.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna