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ASM345875v1

Organism name:
Bacteroides xylanisolvens (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF21-6AC
BioSample:
SAMN09734435
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_003458755.1 (latest)
RefSeq assembly accession:
GCF_003458755.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRVO01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1919771 [UID] 7288558 [GenBank] 9074178 [RefSeq]

See Genome Information for Bacteroides xylanisolvens

There are 287 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 00:19:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,967
CDS (total)::4,900
Genes (coding)::4,027
CDS (coding)::4,027
Genes (RNA)::67
rRNAs::4, 4, 2 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3, 3, 1 (5S, 16S, 23S)
tRNAs::55
ncRNAs::2
Pseudo Genes (total)::873
Pseudo Genes (ambiguous residues)::0 of 873
Pseudo Genes (frameshifted)::774 of 873
Pseudo Genes (incomplete)::113 of 873
Pseudo Genes (internal stop)::52 of 873
Pseudo Genes (multiple problems)::58 of 873
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,017,484
Total ungapped length6,017,484
Number of contigs271
Contig N5049,100
Contig L5041
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)271

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,017,4842716,017,48449,10000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides xylanisolvensBacteroides xylanisolvens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210075.1Bacteroides xylanisolvens XB1Asuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210075.1Bacteroides xylanisolvenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7170.4773.09
Best-match type97.7170.4773.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna