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ASM345876v1

Organism name:
Roseburia hominis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF22-12AC
BioSample:
SAMN09734440
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003458765.1 (latest)
RefSeq assembly accession:
GCF_003458765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRVL01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1919751 [UID] 7288518 [GenBank] 7352618 [RefSeq]

See Genome Information for Roseburia hominis

There are 75 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 23:34:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,412
CDS (total)::3,352
Genes (coding)::3,237
CDS (coding)::3,237
Genes (RNA)::60
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::53
ncRNAs::4
Pseudo Genes (total)::115
Pseudo Genes (ambiguous residues)::5 of 115
Pseudo Genes (frameshifted)::26 of 115
Pseudo Genes (incomplete)::76 of 115
Pseudo Genes (internal stop)::18 of 115
Pseudo Genes (multiple problems)::8 of 115
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,549,767
Total ungapped length3,549,549
Gaps between scaffolds0
Number of scaffolds54
Scaffold N50177,461
Scaffold L505
Number of contigs75
Contig N50147,903
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,549,767543,549,549177,461210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Roseburia hominisRoseburia hominis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000225345.1Roseburia hominis A2-183suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000225345.1Roseburia hominissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7682.4681.48
Best-match type97.7682.4681.48

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna