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ASM345930v1

Organism name:
Segatella copri (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF22-1
BioSample:
SAMN09734437
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_003459305.1 (latest)
RefSeq assembly accession:
GCF_003459305.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRVN01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1920031 [UID] 7289098 [GenBank] 7465838 [RefSeq]

See Genome Information for Segatella copri

There are 498 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 23:27:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,307
CDS (total)::3,227
Genes (coding)::2,769
CDS (coding)::2,769
Genes (RNA)::80
rRNAs::6, 7, 6 (5S, 16S, 23S)
complete rRNAs::6 (5S)
partial rRNAs::7, 6 (16S, 23S)
tRNAs::59
ncRNAs::2
Pseudo Genes (total)::458
Pseudo Genes (ambiguous residues)::0 of 458
Pseudo Genes (frameshifted)::381 of 458
Pseudo Genes (incomplete)::82 of 458
Pseudo Genes (internal stop)::18 of 458
Pseudo Genes (multiple problems)::22 of 458
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,809,181
Total ungapped length3,809,181
Number of contigs139
Contig N5082,399
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)139

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,809,1811393,809,18182,39900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Segatella copriSegatella copri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000157935.1Segatella copri DSM 18205suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000157935.1Segatella coprisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.8363.1068.52
Best-match type96.8363.1068.52

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna