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ASM345958v1

Organism name:
Bacteroides uniformis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF19-3LB
BioSample:
SAMN09734398
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003459585.1 (latest)
RefSeq assembly accession:
GCF_003459585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRWJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1920171 [UID] 7289398 [GenBank] 7349718 [RefSeq]

See Genome Information for Bacteroides uniformis

There are 765 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 00:33:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,104
CDS (total)::4,041
Genes (coding)::3,824
CDS (coding)::3,824
Genes (RNA)::63
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::58
ncRNAs::2
Pseudo Genes (total)::217
Pseudo Genes (ambiguous residues)::3 of 217
Pseudo Genes (frameshifted)::105 of 217
Pseudo Genes (incomplete)::112 of 217
Pseudo Genes (internal stop)::59 of 217
Pseudo Genes (multiple problems)::56 of 217
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,616,357
Total ungapped length4,616,142
Gaps between scaffolds0
Number of scaffolds66
Scaffold N50185,311
Scaffold L508
Number of contigs83
Contig N50156,245
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,616,357664,616,142185,311170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides uniformisBacteroides uniformis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154205.1Bacteroides uniformis ATCC 8492suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154205.1Bacteroides uniformissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.4172.7071.15
Best-match type96.4172.7071.15

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna