U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM345971v1

Organism name:
Phocaeicola vulgatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF19-16
BioSample:
SAMN09734382
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003459715.1 (latest)
RefSeq assembly accession:
GCF_003459715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRWR01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1920251 [UID] 7289538 [GenBank] 7348458 [RefSeq]

See Genome Information for Phocaeicola vulgatus

There are 1480 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 00:35:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,446
CDS (total)::4,372
Genes (coding)::4,158
CDS (coding)::4,158
Genes (RNA)::74
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::68
ncRNAs::2
Pseudo Genes (total)::214
Pseudo Genes (ambiguous residues)::6 of 214
Pseudo Genes (frameshifted)::113 of 214
Pseudo Genes (incomplete)::120 of 214
Pseudo Genes (internal stop)::50 of 214
Pseudo Genes (multiple problems)::58 of 214
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,104,182
Total ungapped length5,103,740
Gaps between scaffolds0
Number of scaffolds138
Scaffold N5082,865
Scaffold L5021
Number of contigs170
Contig N5071,193
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)138

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,104,1821385,103,74082,865320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola vulgatusPhocaeicola vulgatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_028538915.1Phocaeicola vulgatus ATCC 8482suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_028538915.1Phocaeicola vulgatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2078.4079.94
Best-match type99.2078.4079.94

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna