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ASM345996v1

Organism name:
Parabacteroides distasonis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF18-10
BioSample:
SAMN09734349
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003459965.1 (latest)
RefSeq assembly accession:
GCF_003459965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRXK01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1920351 [UID] 7289738 [GenBank] 7665888 [RefSeq]

See Genome Information for Parabacteroides distasonis

There are 1007 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 01:14:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,361
CDS (total)::4,285
Genes (coding)::4,140
CDS (coding)::4,140
Genes (RNA)::76
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::1 (16S)
tRNAs::71
ncRNAs::2
Pseudo Genes (total)::145
Pseudo Genes (ambiguous residues)::2 of 145
Pseudo Genes (frameshifted)::66 of 145
Pseudo Genes (incomplete)::68 of 145
Pseudo Genes (internal stop)::41 of 145
Pseudo Genes (multiple problems)::28 of 145
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,151,392
Total ungapped length5,151,211
Gaps between scaffolds0
Number of scaffolds45
Scaffold N50258,354
Scaffold L508
Number of contigs59
Contig N50228,194
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,151,392455,151,211258,354140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides distasonisParabacteroides distasonis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000012845.1Parabacteroides distasonis ATCC 8503suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012845.1Parabacteroides distasonissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.6175.6881.02
Best-match type97.6175.6881.02

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna