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ASM346006v1

Organism name:
Ruminococcus sp. AF17-22AC (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF17-22AC
BioSample:
SAMN09734333
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003460065.1 (latest)
RefSeq assembly accession:
GCF_003460065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRXT01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1920411 [UID] 7289858 [GenBank] 7349238 [RefSeq]

See Genome Information for Ruminococcus sp. AF17-22AC

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/04/2018 01:08:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,388
CDS (total)::3,327
Genes (coding)::3,168
CDS (coding)::3,168
Genes (RNA)::61
rRNAs::1, 2, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::2, 1 (16S, 23S)
tRNAs::52
ncRNAs::4
Pseudo Genes (total)::159
Pseudo Genes (ambiguous residues)::3 of 159
Pseudo Genes (frameshifted)::47 of 159
Pseudo Genes (incomplete)::117 of 159
Pseudo Genes (internal stop)::25 of 159
Pseudo Genes (multiple problems)::28 of 159
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,528,951
Total ungapped length3,528,861
Gaps between scaffolds0
Number of scaffolds29
Scaffold N50306,415
Scaffold L504
Number of contigs38
Contig N50304,690
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)29

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,528,951293,528,861306,41590

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus sp. AF17-22ACRuminococcus sp. AF17-22AC

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014297355.1Blautia intestinalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.5275.0476.05

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna