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Source database (GenBank or RefSeq) File type

ASM346019v1

Organism name:: Lachnospira eligens (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: AF18-47
BioSample:: SAMN09734368
BioProject:: PRJNA482748
Submitter:: BGI
Date:: 2018/09/05
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003460195.1 (latest)
RefSeq assembly accession:: GCF_003460195.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QRWW01
Assembly method:: SOAPdenovo v. 2
Expected final version:: yes
Genome coverage:: 100x
Sequencing technology:: Illumina Hiseq

IDs: 1920471 [UID] 7289988 [GenBank] 7358038 [RefSeq]

See Genome Information for Lachnospira eligens

Pathogen Detection Resources

There are 116 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003460195.1	=	GCF_003460195.1	ASM346019v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/04/2018 00:17:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,942
CDS (total)::2,893
Genes (coding)::2,804
CDS (coding)::2,804
Genes (RNA)::49
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::42
ncRNAs::4
Pseudo Genes (total)::89
Pseudo Genes (ambiguous residues)::4 of 89
Pseudo Genes (frameshifted)::18 of 89
Pseudo Genes (incomplete)::68 of 89
Pseudo Genes (internal stop)::9 of 89
Pseudo Genes (multiple problems)::10 of 89
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,019,757
Total ungapped length	3,019,421
Gaps between scaffolds	0
Number of scaffolds	32
Scaffold N50	281,839
Scaffold L50	4
Number of contigs	43
Contig N50	249,903
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	32

	ANI	Query coverage	Subject coverage
Declared type	94.83	73.51	78.40
Best-match type	94.83	73.51	78.40

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ASM346019v1

See Genome Information for Lachnospira eligens

Pathogen Detection Resources

There are 116 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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