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ASM346066v1

  • Anomalous assembly.
Organism name:
Ruminococcus sp. OF03-6AA (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: OF03-6AA
BioSample:
SAMN09736699
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003460665.1 (latest)
RefSeq assembly accession:
GCF_003460665.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTVQ01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1920711 [UID] 7290458 [GenBank] 7466458 [RefSeq]

See Genome Information for Ruminococcus sp. OF03-6AA

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 11:04:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,581
CDS (total)::3,502
Genes (coding)::3,082
CDS (coding)::3,082
Genes (RNA)::79
rRNAs::3, 3, 10 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::1, 3, 10 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::420
Pseudo Genes (ambiguous residues)::0 of 420
Pseudo Genes (frameshifted)::308 of 420
Pseudo Genes (incomplete)::113 of 420
Pseudo Genes (internal stop)::21 of 420
Pseudo Genes (multiple problems)::21 of 420
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,761,957
Total ungapped length3,761,957
Number of contigs122
Contig N5074,883
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)122

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,761,9571223,761,95774,88300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus sp. OF03-6AARuminococcus sp. OF03-6AA

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001487165.1Blautia massiliensis (ex Durand et al. 2017)type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.2265.4066.23

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna