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ASM346104v1

  • Anomalous assembly.
Organism name:
Coprobacillus sp. AF24-1LB (firmicutes)
Taxonomy check:
Failed
Infraspecific name:
Strain: AF24-1LB
BioSample:
SAMN09734466
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_003461045.1 (latest)
RefSeq assembly accession:
GCF_003461045.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTWI01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1920901 [UID] 7290838 [GenBank] 7347938 [RefSeq]

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 12:01:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,928
CDS (total)::2,866
Genes (coding)::2,753
CDS (coding)::2,753
Genes (RNA)::62
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::54
ncRNAs::4
Pseudo Genes (total)::113
Pseudo Genes (ambiguous residues)::9 of 113
Pseudo Genes (frameshifted)::54 of 113
Pseudo Genes (incomplete)::32 of 113
Pseudo Genes (internal stop)::45 of 113
Pseudo Genes (multiple problems)::25 of 113
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,801,851
Total ungapped length2,801,591
Gaps between scaffolds0
Number of scaffolds66
Scaffold N50123,532
Scaffold L508
Number of contigs92
Contig N5087,099
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,801,851662,801,591123,532260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Coprobacillus sp. AF24-1LBCoprobacillus sp. AF24-1LB

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003024685.1Faecalibacillus intestinalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.8182.4282.66

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna