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ASM346124v1

Organism name:
Blautia sp. AF19-10LB (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF19-10LB
BioSample:
SAMN09734375
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003461245.1 (latest)
RefSeq assembly accession:
GCF_003461245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTWS01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1921001 [UID] 7291038 [GenBank] 7355678 [RefSeq]

See Genome Information for Blautia sp. AF19-10LB

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 12:42:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,858
CDS (total)::3,790
Genes (coding)::3,605
CDS (coding)::3,605
Genes (RNA)::68
rRNAs::1, 4, 4 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::4, 4 (16S, 23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::185
Pseudo Genes (ambiguous residues)::9 of 185
Pseudo Genes (frameshifted)::55 of 185
Pseudo Genes (incomplete)::123 of 185
Pseudo Genes (internal stop)::37 of 185
Pseudo Genes (multiple problems)::36 of 185
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,042,273
Total ungapped length4,041,903
Gaps between scaffolds0
Number of scaffolds107
Scaffold N5088,733
Scaffold L5014
Number of contigs144
Contig N5085,278
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)107

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,042,2731074,041,90388,733370

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Blautia sp. AF19-10LBBlautia sp. AF19-10LB

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001487165.1Blautia massiliensis (ex Durand et al. 2017)type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.7012.4913.59

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna