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ASM346230v1

  • Anomalous assembly.
Organism name:
Coprobacillus sp. TM10-10 (firmicutes)
Taxonomy check:
Failed
Infraspecific name:
Strain: TM10-10
BioSample:
SAMN09737022
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_003462305.1 (latest)
RefSeq assembly accession:
GCF_003462305.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTYT01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1921531 [UID] 7292098 [GenBank] 7347038 [RefSeq]

Pathogen Detection Resources

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 13:10:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,890
CDS (total)::2,840
Genes (coding)::2,730
CDS (coding)::2,730
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::110
Pseudo Genes (ambiguous residues)::9 of 110
Pseudo Genes (frameshifted)::42 of 110
Pseudo Genes (incomplete)::39 of 110
Pseudo Genes (internal stop)::42 of 110
Pseudo Genes (multiple problems)::21 of 110
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,807,201
Total ungapped length2,806,961
Gaps between scaffolds0
Number of scaffolds53
Scaffold N50111,407
Scaffold L507
Number of contigs77
Contig N5099,928
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)53

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,807,201532,806,961111,407240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Coprobacillus sp. TM10-10Coprobacillus sp. TM10-10

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003024685.1Faecalibacillus intestinalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7587.7888.20

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna