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ASM346236v1

Organism name:
Roseburia sp. TF10-5 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TF10-5
BioSample:
SAMN09736940
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003462365.1 (latest)
RefSeq assembly accession:
GCF_003462365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTYW01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1921561 [UID] 7292168 [GenBank] 7347098 [RefSeq]

See Genome Information for Roseburia sp. TF10-5

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 13:45:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,387
CDS (total)::3,335
Genes (coding)::3,179
CDS (coding)::3,179
Genes (RNA)::52
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::156
Pseudo Genes (ambiguous residues)::1 of 156
Pseudo Genes (frameshifted)::42 of 156
Pseudo Genes (incomplete)::109 of 156
Pseudo Genes (internal stop)::21 of 156
Pseudo Genes (multiple problems)::15 of 156
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,443,473
Total ungapped length3,443,393
Gaps between scaffolds0
Number of scaffolds50
Scaffold N50227,170
Scaffold L506
Number of contigs58
Contig N50176,979
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,443,473503,443,393227,17080

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Roseburia sp. TF10-5Roseburia sp. TF10-5

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001406815.1Roseburia faecissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.9075.8478.31

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna