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Source database (GenBank or RefSeq) File type

ASM346238v1

Anomalous assembly.

Organism name:

Ruminococcus sp. TF10-12AC (firmicutes)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: TF10-12AC

BioSample:

SAMN09736934

BioProject:

PRJNA482748

Submitter:

BGI

Date:

2018/08/31

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

contaminated

Excluded from RefSeq:

contaminated

GenBank assembly accession:

GCA_003462385.1 (latest)

RefSeq assembly accession:

GCF_003462385.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

QTYX01

Assembly method:

SOAPdenovo v. 2

Expected final version:

yes

Genome coverage:

100x

Sequencing technology:

Illumina Hiseq

IDs: 1921571 [UID] 7292178 [GenBank] 7352398 [RefSeq]

See Genome Information for Ruminococcus sp. TF10-12AC

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003462385.1	=	GCF_003462385.1	ASM346238v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/09/2018 13:42:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,015
CDS (total)::2,955
Genes (coding)::2,822
CDS (coding)::2,822
Genes (RNA)::60
rRNAs::2, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
partial rRNAs::1 (16S)
tRNAs::53
ncRNAs::4
Pseudo Genes (total)::133
Pseudo Genes (ambiguous residues)::3 of 133
Pseudo Genes (frameshifted)::33 of 133
Pseudo Genes (incomplete)::93 of 133
Pseudo Genes (internal stop)::23 of 133
Pseudo Genes (multiple problems)::17 of 133
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,212,017
Total ungapped length	3,211,937
Gaps between scaffolds	0
Number of scaffolds	32
Scaffold N50	170,110
Scaffold L50	7
Number of contigs	40
Contig N50	145,223
Contig L50	8
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	32

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	96.62	70.59	69.56

Assembly

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ASM346238v1

See Genome Information for Ruminococcus sp. TF10-12AC

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

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